Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015940355.1_cds_XP_016484631.1_75629
CDS Infomation

[gene=LOC107805152] [db_xref=GeneID:107805152] [protein=E3 ubiquitin-protein ligase Hakai-like] [protein_id=XP_016484631.1] [location=join(5438..5689,6539..6597,7572..8754)] [gbkey=CDS]
Sequence

ATGCTTCAGATCAGGCTAAGCAAACCAGCCAGTGAGAGTGGTGGAGGTGCTAAGTCTTTG
CCTTCGGACAGTATTACAGTTGCTTGTCCTGATCACCTTGTTTTAGCTGATCTTCCTGTA
GCCAAGAGCCTTGGTTCAGCAAATGCTGCTTCTCTGCTCAAGACTGTTGGCCGCCGGTCC
CGTCGCCAGCTTGGTGAACGAGTACATTTTTGTGTCCGTTGTGACTTTCCAATTGCTATT
TATGGACGTCTGAGCCCATGTGAACATGCCTTCTGCTTAGATTGTGCCAGGAGTGATTCT
CTCTGCTACCTCTGCGATGAACGCATTCAGAAGATTCAGACAATTAAATTGATGGAAGGG
ATCTTCATCTGTGCAGCTCCGCATTGTCTCAAGTCCTTTCTGAAGAAGACTGAATTTGAA
TCTCATATTCATGAGAATCACGGTGATCTCCTTCATCAAACTGCAGAAAAAGATGGAAAT
GTTTCGGAGTCTGCCAGTGCTAGAAAACCTGCAGCCTCTGATTCTACAGTGCAAGCACCG
CCTAGGCCCCTATTTTCTCCTAGTTCAGGTTCCCAGGTACATGATCGTGAAGACAAATCT
CATCATTCTCAAACTAGAGACCAACAGCCTCCTAGGCTTGTCATGCAACCAAAGCCAACA
CCACCTTTCGCTGGGTCAATCCAAAATCATCCATTAGAGCAACAGTCTGATAGTAATCCT
CCTCCGGGCTTTGAAAGGCCCGGCAGCCAGAACCGGTTTCCCCAACAAGGTTTTGACACA
CAGGGCGCATTGCGGCCAGAGCCAGGTCAGTTTCCAGACAAGCAACAAGGGATTATAGGG
GGTTCCCCTTTCCCTGAATATCCTATGCACATGTCCCAACCTCATGGCTTTGCAGTGCCT
ATGAGTTCGAATCCAGTTTTGGCTCCTCAATTTGGTTATCCTCAGTTTGCACCCGATGGA
GCTCAACCATTTTATGGTGCCCCGTTTGAGATGCCTAGGCCAGACTCAACTCCTGAAATG
GGATCAGAACAAGGGTCTTTGCTAGGTTTTCCACCCGGCGCTGCAGGAAGTATGAATTTT
GCAGAAAATTACCCTCGGCCATGGAATATGGGGCAGCAGGTTGGGCCTTTTGAGCGCTCT
GCAGTTCAACCTCCTGGGGATGGTTTTGTAAATGCCGCTGATCCTCAAGGAAGACCCGTA
TTTTTCCAAGGAGACTATGGAAGGAATGCCGGTATAATGCCCTCAAACCTGCCACCTCCA
CCTTCAGCCAACCGAGGATCGGAAGGTGGACAGAGTGGAAATTCAATGGACAACAGAGAT
AGCAAGGGTATATTGATGCCACAACCTATGACCCTTCCACCACCCCCACCTTTACCACAT
CCCATGTCACAACTTCAAAGAGGAGGCAGGCACTACTCTGATGCTAGTCATGATGGACAG
GGCTTTGGTTGGCAACACGAGAAGCGTGATAGTTATGGAAGCAGCCAGGACTAG

Peptide Sequence

PEP ID

XP_016484631.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase Hakai-like [Nicotiana tabacum]
Sequence

MLQIRLSKPASESGGGAKSLPSDSITVACPDHLVLADLPVAKSLGSANAASLLKTVGRRS
RRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKLMEG
IFICAAPHCLKSFLKKTEFESHIHENHGDLLHQTAEKDGNVSESASARKPAASDSTVQAP
PRPLFSPSSGSQVHDREDKSHHSQTRDQQPPRLVMQPKPTPPFAGSIQNHPLEQQSDSNP
PPGFERPGSQNRFPQQGFDTQGALRPEPGQFPDKQQGIIGGSPFPEYPMHMSQPHGFAVP
MSSNPVLAPQFGYPQFAPDGAQPFYGAPFEMPRPDSTPEMGSEQGSLLGFPPGAAGSMNF
AENYPRPWNMGQQVGPFERSAVQPPGDGFVNAADPQGRPVFFQGDYGRNAGIMPSNLPPP
PSANRGSEGGQSGNSMDNRDSKGILMPQPMTLPPPPPLPHPMSQLQRGGRHYSDASHDGQ
GFGWQHEKRDSYGSSQD

Transcript Sequence

Gene sequence data has not been registered.